PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35670_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 346aa    MW: 38871.7 Da    PI: 6.1125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35670_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13170216455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Cotton_A_35670_BGI-A2_v1.0 170 DHVIAERKRREKLSQRFISLSALIPGL-----KKNDKASVLGDAIKYLKQLQ 216
                                 6999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-15170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-16171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-12171219No hitNo description
SMARTSM003532.1E-13172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDPTFFPQY PTMNPIDFSF DDFNFESFSP ESYTSYTNID HSHGLHIEAS HNVGGDDFRR  60
PMKQLKTTSS TWKSSCITDN IPPKAASSSS SHIISFDNSN SSPPDISQQY CGLDRDLKRK  120
NEVGSDGNYK GTFPSLISQV AYEDQYCSPK FEQVSKRVGS STRAPLYAQD HVIAERKRRE  180
KLSQRFISLS ALIPGLKKND KASVLGDAIK YLKQLQERVG TLENQVATKT MESVIIVRKT  240
QIYSDDETSS CGENFESQSN NPFPEIEARV SEKDVLIRIH GEKNKGCIPN IINEVEKLHL  300
CVLNTNVLPF GQATLDITIV AQMEADFSMT VKDLVKSLRL ALLNFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492040.10.0PREDICTED: transcription factor bHLH19-like isoform X1
TrEMBLA0A0D2SIJ10.0A0A0D2SIJ1_G
STRINGVIT_07s0205g00180.t011e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-65bHLH family protein